How to Tweak Consed
If you're getting the three lines of ": Command not found" when you change the shell, it seems that miniassembly doesn't work in Consed, nor does phredPhrap. If you don't need to use either of these commands you can skip this, as Consed otherwise seems to work fine. If you do need to use one, type the following after you get that initial three-lines message (and as always in Unix, note that the spaces are important):
Continue as usual and things should now work properly.