Publications

• Lopatto D, Rosenwald AG, … Jones CJ, … Elgin SCR. 2020. "Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience" Journal of Microbiology & Biology Education 21(1):1–18. abstract
• Laakso, M.M., L.V. Paliulis, P. Croonquist, B. Derr, E. Gracheva, C. Hauser, C. Howell, C.J. Jones, J.D. Kagey, J. Kennell, S.C. Silver Key, H. Mistry, S. Robic, J. Sanford, M. Santisteban, C. Small, R. Spokony, J. Stamm, M. Van Stry, W. Leung, and S.C.R. Elgin. 2017. "An undergraduate bioinformatics curriculum that teaches eukaryotic gene structure." CourseSource abstract
• Leung, W., … C.J. Jones, S.L. Christ, S. Mamari, A.S. Rinaldi, G. Stity, … and S.C.R. Elgin. 2015. "Retrotransposons Are the Major Contributors to the Expansion of the Drosophila ananassae Muller F Element." G3: Genes|Genomes|Genetics 7(5):2439–2460. abstract (Moravian student authors in italics)
• Elgin, S.C.R.E., C. Hauser, T.M. Holzen, C. Jones, A. Kleinschmit, J. Leatherman, and The Genomics Education Partnership. 2017. "The GEP: Crowd-Sourcing Big Data Analysis with Undergraduates" Trends in Genetics 33(22):81–85.
• Leung, W., … C.J. Jones, T. Aronhalt, J.M. Bellush, C. Burke, S. DeFazio, B.R. Does, T.D. Johnson, N. Keysock, N.H. Knudsen, J. Messler, K. Myirski, J.L. Rekai, R.M. Rempe, M.S. Salgado, E. Stagaard, J.R. Starcher, A.W. Waggoner, A.K. Yemelyanova, … and S.C.R. Elgin. 2015. "Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties over 40 Million Years of Evolution." G3: Genes|Genomes|Genetics 5(5):719–740. abstract (Moravian student authors in italics)
• Lopatto, D., C. Hauser, C.J. Jones, D. Paetkau, V. Chandrasekaran, D. Dunbar, C. MacKinnon, J. Stamm, C. Alvarez, D. Barnard, J.E.J. Bedard,, A.E. Bednarski, S. Bhalla, J.M. Braverman, M. Burg, H.-M. Chung, R.J. DeJong, J.R. DiAngelo, C. Du, T.T. Eckdahl, J. Emerson, A. Frary, D. Frohlich, A.L. Goodman, Y. Gosser, S. Govind, A. Haberman, A.T. Hark, A. Hoogewerf, D. Johnson, L. Kadlec, M. Kaehler, S.C. Silver Key, N. Kokan, O.R. Kopp, G.A. Kuleck, J. Lopilato, J.C. Martinez-Cruzado, G. McNeil, S. Mel, A. Nagengast, P.J. Overvoorde, S. Parrish, M. Preuss, L.D. Reed, E.G. Regisford, D. Revie, S. Robic, J.A. Roecklien-Canfield, A.G. Rosenwald, M.R. Rubin, K. Saville, S. Schroeder, K. Sharif, M. Shaw, G. Skuse, C.D. Smith, M. Smith, S.T. Smith, E.P. Spana, M. Spratt, A. Sreenivasan, J.S. Thompson, M. Wawersik, M. Wolyniak, J. Youngblom, L. Zhou, J. Buhler, E. Mardis, W. Leung, C.D. Shaffer, J. Threlfall, and S.C.R. Elgin. 2014. "A Central Support System Can Facilitate Implementation and Sustainability of a Classroom-Based Undergraduate Research Experience (CURE) in Genomics" CBE—Life Sciences Education 13(1):711–723. abstract
• Shaffer, C.D., C.J. Alvarez, A.E. Bednarski, D. Dunbar, A.L. Goodman, C. Reinke, A.G. Rosenwald, M.J. Wolyniak, C. Bailey, D. Barnard, C. Bazinet, D.L. Beach, J.E.J. Bedard, S. Bhalla, J. Braverman, M. Burg, V. Chandrasekaran, H.-M. Chung, K. Clase, R.J. DeJong, J.R. DiAngelo, C. Du, T.T. Eckdahl, H. Eisler, J.A. Emerson, A. Frary, D. Frohlich, Y. Gosser, S. Govind, A. Haberman, A.T. Hark, C. Hauser, A. Hoogewerf, L.L.M. Hoopes, C.E. Howell, D. Johnson, C.J. Jones, L. Kadlec, M. Kaehler, S.C. Silver Key, A. Kleinschmit, N.P. Kokan, O. Kopp, G. Kuleck, J. Leatherman, J. Lopilato, C. MacKinnon, J.C. Martinez-Cruzado, G. McNeil, S. Mel, H. Mistry, A. Nagengast, P. Overvoorde, D.W. Paetkau, S. Parrish, C.N. Peterson, M. Preuss, L.K. Reed, D. Revie, S. Robic, J. Roecklein-Canfield, M.R. Rubin, K. Saville, S. Schroeder, K. Sharif, M. Shaw, G. Skuse, C.D. Smith, M.A. Smith, S.T. Smith, E. Spana, M. Spratt, A. Sreenivasan, J. Stamm, P. Szauter, J.S. Thompson, M. Wawersik, J. Youngblom, L. Zhou, E.R. Mardis, J. Buhler, W. Leung, D. Lopatto, and S.C.R. Elgin. 2014. "A Course-Based Research Experience: How Benefits Change with Increased Investment in Instructional Time " CBE—Life Sciences Education 13(1):111–130. abstract
• Wolyniak, M.J., C.J. Alvarez, V. Chandrasekaran, T.M. Grana, A. Holgado, C.J. Jones, R.W. Morris, A.L. Pereira, J. Stamm, T.M. Washington, and Y. Yang. 2010. "Building Better Scientists Through Cross-disciplinary Collaboration with Synthetic Biology: A Report from the Genome Consortium for Active Teaching Workshop 2010" CBE—Life Sciences Education 9(4):399–404.
• Shaffer, C.D., C. Alvarez, C. Bailey, D. Barnard, S. Bhalla, C. Chandrasekaran, V. Chandrasekaran, H.-M. Chung, D.R. Dorer, C. Du, T.T. Eckdahl, J.L. Poet, D. Frohlich, A.L. Goodman, Y. Gosser, C. Hauser, L.L.M. Hoopes, D. Johnson, C.J. Jones, M. Kaehler, N. Kokan, O.R. Kopp, G.A. Kuleck, G. McNeil, R. Morris, R. Moss, J.L. Myka, A. Nagengast, P.J. Overvoorde, E. Shoop, S. Parrish, K. Reed, E.G. Regisford, D. Revie, A.G. Rosenwald, K. Saville, S. Schroeder, M. Shaw, G. Skuse, C. Smith, M. Smith, E. Spana, M. Spratt, J. Stamm, J.S. Thompson, M.Wawersik, B.A. Wilson, J. Youngblom, W. Leung, E.R. Mardis, D. Lopatto, and S.C.R. Elgin. 2010. "The Genomics Education Partnership: Successful Integration of Research into Laboratory Classes at a Diverse Group of Undergraduate Institutions" CBE—Life Sciences Education 9(1):55–69. abstract
• Lopatto, D., C. Alvarez, D. Barnard, C. Chandrasekaran, H.-M. Chung, C. Du, T. Eckdahl, A.L. Goodman, C. Hauser, C.J. Jones, O.R. Kopp, G.A. Kuleck, G. McNeil, R. Morris, J.L. Myka, A. Nagengast, P.J. Overvoorde, J.L. Poet, K. Reed, G. Regisford, D. Revie, A. Rosenwald, K. Saville, M. Shaw, G.R. Skuse, C. Smith, M. Smith, M. Spratt, J. Stamm, J.S. Thompson, B.A. Wilson, C. Witkowski, J. Youngblom, W. Leung, C.D. Shaffer, J. Buhler, E. Mardis, and S.C.R. Elgin. 2008. "Genomics Education Partnership" Science 322(5902):684–685.
• Joiner, M., Z. Asztalos, C.J. Jones, T. Tully, and C.-F. Wu. 2007. "Effects of Mutant Drosophila K⁺ Channel Subunits on Habituation of the Olfactory Jump Response." Journal of Neurogenetics 21(1):45–58. abstract
• Nowotny, P., S.M. Gorski, S.W. Han, K. Philips, W.J. Ray, V. Nowotny, C.J. Jones, R.F. Clark, R.L. Cagan, and A.M. Goate. 2000. "Posttranslational Modification and Plasma Membrane Localization of the Drosophila melanogaster Presenilin." Molecular and Cellular Neuroscience 15(1):88–98. abstract
• Murray, M.M., C.J. Jones, and R.F. Clark. 2000. "The presenilin gene is very highly conserved throughout evolution." Neurobiology of Aging 21(supplement 1):S48. abstract
• Pinto S., D.G. Quintana, P. Smith, R.M. Mihalek, Z.H. Hou, S. Boynton, C.J. Jones, M. Hendricks, K. Velinzon, J.A. Wohlschlegel, R.J. Austin, W.S. Lane, T. Tully, and A. Dutta. 1999. "latheo encodes a subunit of the origin recognition complex and disrupts neuronal proliferation and adult olfactory memory when mutant." Neuron 23(1):45–54. abstract
• Clark, R.F., P. Nowotny, C.J. Jones, K. Philips, and A.M. Goate. 1997. "The use of Drosophila melanogaster as a model organism to characterize the presenilin gene associated with early-onset Alzheimer's disease." American Journal of Human Genetics 61(4):A169. abstract
• Mihalek, R.*, C.J. Jones*, and T. Tully. 1997. "The Drosophila Mutation turnip has Pleiotropic Behavioral Effects and Does Not Specifically Affect Learning." Learning and Memory 3:425–444. abstract
  * Equal contributors
• Müller, V., C.J. Jones, I. Kawagishi, S.-I. Aizawa, and R.M. Macnab. 1992. "Characterization of the fliE Genes of Escherichia coli and Salmonella typhimurium and Identification of the FliE Protein as a Component of the Flagellar Hook-Basal Body Complex." Journal of Bacteriology 174(7):2298–2304. abstract
• Jones, C.J. and S.-I. Aizawa. 1991. "The Bacterial Flagellum and Flagellar Motor: Structure, Assembly and Function." Advances in Microbial Physiology 32:109–172. abstract
• Jones, C.J. and S.-I. Aizawa. 1991. "Genetic Control of the Bacterial Flagellar Regulon." Current Opinion in Genetics and Development 1(3):319–323. abstract
• Jones, C.J. and R.M. Macnab. 1990. "Flagellar Assembly in Salmonella typhimurium: Analysis with Temperature-Sensitive Mutants." Journal of Bacteriology 172(3):1327–1339. abstract
• Jones, C.J., R.M. Macnab, H. Okino, and S.-I. Aizawa. 1990. "Stoichiometric Analysis of the Flagellar Hook-(Basal-Body) Complex of Salmonella typhimurium." Journal of Molecular Biology 212(2):377–387. abstract
• Jones, C.J., M. Homma, and R.M. Macnab. 1989. "L-, P-, and M-Ring Proteins of the Flagellar Basal Body of Salmonella typhimurium: Gene Sequences and Deduced Protein Sequences." Journal of Bacteriology 171(7):3890–3900. abstract
• Jones, C.J., M. Homma, and R.M. Macnab. 1987. "Identification of Proteins of the Outer (L and P) Rings of the Flagellar Basal Body of Escherichia coli." Journal of Bacteriology 169(4):1489–1492. abstract
• Yamaguchi, S., S.-I. Aizawa, M. Kihara, M. Isomura, C.J. Jones, and R.M. Macnab. 1986. "Genetic Evidence for a Switching and Energy-Transducing Complex in the Flagellar Motor of Salmonella typhimurium." Journal of Bacteriology 168(3):1172–1179. abstract
• Aizawa, S.-I., G.E. Dean, C.J. Jones, and R.M. Macnab. 1985. "Purification and Characterization of the Flagellar Hook-Basal Body Complex of Salmonella typhimurium." Journal of Bacteriology 161 (3):836–849. abstract